Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs145791759 | chr1:26987529 | C/T | 0.000148 | 63 | 65.47 | 46.65 | 24.17 | KM Plot |
| KICH | rs147294579 | chr20:44347350 | T/C | 9.8E-5 | 63 | 66.1 | 17.22 | 77.8 | KM Plot |
| KICH | rs148317677 | chr16:27181443 | C/A | 4.67E-7 | 63 | 68.13 | 36.03 | 16.9 | KM Plot |
| KICH | rs148681790 | chr11:3743690 | A/AAT | 0.000113 | 62 | 65.47 | 59.23 | 17.32 | KM Plot |
| KICH | rs148799270 | chr14:91789425 | C/G | 4.65E-6 | 64 | 66.1 | 73.7 | 26.33 | KM Plot |
| KICH | rs149738768 | chr2:13935667 | C/T | 7.07E-7 | 63 | 62.43 | 89.13 | 16.9 | KM Plot |
| KICH | rs150636658 | chr9:116527352 | A/T | 1.05E-6 | 62 | 67.47 | 39.55 | 16.9 | KM Plot |
| KICH | rs1602827 | chr3:149054892 | C/T | 6.74E-5 | 65 | 17.32 | 51.77 | 74.83 | KM Plot |
| KICH | rs169739 | chr6:33483312 | C/A | 6.21E-7 | 64 | 65.47 | 53 | 16.9 | KM Plot |
| KICH | rs17066618 | chr13:77314319 | T/C | 5.63E-7 | 64 | 64.83 | 60.8 | 16.9 | KM Plot |
| KICH | rs17096910 | chr10:119585576 | T/C | 7.66E-15 | 62 | 68.8 | 5.72 | 30.67 | KM Plot |
| KICH | rs17127201 | chr1:85877498 | C/T | 8.92E-7 | 64 | 67.47 | 60.5 | 20.75 | KM Plot |
| KICH | rs17127231 | chr1:85881185 | A/G | 8.92E-7 | 64 | 67.47 | 60.5 | 20.75 | KM Plot |
| KICH | rs17127235 | chr14:91787881 | A/G | 3.62E-6 | 65 | 26.33 | 73.7 | 65.47 | KM Plot |
| KICH | rs17594786 | chr6:148473897 | A/G | 1.31E-6 | 63 | 67.47 | 37.68 | 20.75 | KM Plot |